How ISRIB Reverses Cognitive Deficits After Traumatic Brain Injury

An experimental drug, nicknamed ISRIB, completely eliminates learning and memory deficits in mice with concussions, previous research has shown. Now, Howard Hughes Medical Institute (HHMI) Investigator Peter Walter and colleagues, have provided a clearer view of how ISRIB works — by pinning together parts of a protein involved in cellular stress.

Tracking how ISRIB interacts with its protein target could potentially help researchers modify the drug to treat traumatic brain injury and neurodegeneration in humans, says Walter, a biochemist at the University of California, San Francisco.

ISRIB, (an acronym for Integrated Stress Response inhibitor), is an experimental drug which reverses the effects of eIF2α phosphorylation with an IC50 of 5nM. It has also been shown to inhibit eIF2α phosphorylation-induced stress granule (SG) formation. Since eIF2α phosphorylation is known to be involved in memory formation, ISRIB was tested to see whether it would be active in vivo, and was found to readily cross the blood-brain barrier, with a half-life of 8 hours.

3D printed model of elF2b protein

3D printed model of elF2b protein
Credit: Walter Lab/HHMI/UCSF

Subsequent testing in 2013 found ISRIB to produce significant nootropic effects in mice, as measured by enhancement of spatial and fear-associated learning in standard water maze and conditioned environment tests. Testing in 2017 showed the experimental drug improved the ability of brain-injured mice to learn and form memories on memory tests, thus appearing to reverse impairments from traumatic brain injury.

Traumatic Brain Injury

Cells in our bodies respond to stressors such as viral infections, starvation, and injury in the same way: by restricting the production of new proteins. This “cellular stress response” helps keep cells alive by buying them time to recover.

“But in many cases, this response can be maladaptive,”

Walter says.

Traumatic brain injury persistently turns on the cellular stress response — and the resulting drop in protein production may slow critical cognitive processes. Learning and storing memories, for example, requires brain cells to produce proteins that help create long-lasting connections in the brain.

In 2013, after screening more than 100,000 molecules for drugs that alter the stress response, Walter and colleagues identified 28 potential candidates, including ISRIB. ISRIB keeps a key protein production line operating in stressed cells, the team discovered.

But ISRIB didn’t dissolve well in watery solutions, so researchers didn’t think it was a viable drug — at first. A closer look revealed that ISRIB was 1,000 times more potent than many of the other molecular options.

So even the tiny amount of ISRIB that can enter cells was enough to provoke a response.

eIF2B And ISRIB

Stressed cells dosed with the drug began synthesizing proteins again — and remarkably, ISRIB enhanced learning and memory in mice. Last year, the researchers discovered that ISRIB also restored long-term memory in mice with concussions.

The team knew from previous experiments that ISRIB prevents the cellular stress response by stabilizing a protein called eIF2B, which typically helps turn on protein production.

In stressed cells, eIF2B is blocked from activating another protein complex that initiates protein synthesis. But when stressed cells receive ISRIB, eIF2B remains active, and cells continue to produce proteins.

To better understand how ISRIB activates and stabilizes eIF2B, Walter and his colleagues wanted to see exactly how the molecule and protein interacted.

Together with Adam Frost, a structural biologist and HHMI faculty scholar at UCSF, the researchers used cryo-electron microscopy to obtain a detailed structure of ISRIB bound to eight eIF2B components.

“We can see with almost atomic resolution where the drug binds to the protein,” Walter says. “It’s really amazing to see a small molecule under a microscope.”

The researchers saw that the propeller-shaped ISRIB sits deep inside eIF2B and acts as a molecular staple to pin two identical subcomplexes together.

“The current idea is that ISRIB holding the eIF2B complex together may be enough to stabilize the protein and increase its activity,”

Walter says.

UCSF has licensed ISRIB to Calico, a company founded by Alphabet, Google’s parent company, to research aging. Knowing how ISRIB and its protein target fit together could help researchers there tailor the molecule specifically for human clinical trials for neurodegeneration and traumatic brain injury treatment.

So far, ISRIB does not appear to be toxic, perhaps because it only works in stressed cells and not in cells functioning normally, Walter says.

Jordan C. Tsai, Lakshmi E. Miller-Vedam, Aditya A. Anand, Priyadarshini Jaishankar, Henry C. Nguyen, Adam R. Renslo, Adam Frost, Peter Walter
Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule
Science 30 Mar 2018: Vol. 359, Issue 6383, eaaq0939 DOI: 10.1126/science.aaq0939

Alisa F. Zyryanova, Félix Weis, Alexandre Faille, Akeel Abo Alard, Ana Crespillo-Casado, Yusuke Sekine, Heather P. Harding, Felicity Allen, Leopold Parts, Christophe Fromont, Peter M. Fischer, Alan J. Warren, David Ron
Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B
Science 30 Mar 2018: Vol. 359, Issue 6383, pp. 1533-1536 DOI: 10.1126/science.aar5129

Image: ISRIB, a brain-boosting experimental drug, (propeller-shaped molecule, center), and its target protein, eIF2B. Credit: J. Tsai et al./Science 2018