Hole In Bacterial Armour Revealed By DNA Melting Insights

New insights into DNA ‘melting’, a crucial process fundamental to all life, are reported in a new study from Imperial College London researchers. The findings may provide shed new light on eradicating harmful bacteria.

DNA encodes information to make proteins, which are key to all processes in life. The DNA molecule is composed of two complementary strands, which are normally wrapped around each other in a helical structure.

When a cell wants to make proteins, the strands need to be pulled apart or ‘melted’ first, before a fundamental cellular process called transcription takes place. Because transcription also takes place in human cells, the new findings may provide insights for conditions such as cancer and other diseases.

DNA Melting Details

But although this DNA melting process is fundamental to life, scientists are still in the dark about the intricate details of how the cell’s machinery captures and reads the DNA.

In the new research the team used an extremely powerful technique called cryo-electron microscopy to physically see how the DNA melting process happens in detail.

The experiments focused on a molecule called RNA polymerase, that captures and pulls apart the DNA, before reading the sequence in the melted out DNA strand to make a molecule called RNA.

This is then used as a template to make proteins. The findings revealed that the RNA polymerase molecule changes shape in a dramatic fashion when it locks onto DNA.

This shape-shifting allows it to capture and ‘melt’ the DNA at the same time.

Integrated Processes

Previously, researchers were unclear if RNA polymerase captured the DNA before unwinding the strands, or if DNA is melted out first before fully captured by the RNA polymerase. Now their new finds reveal these two events are integrated processes.

Professor Xiaodong Zhang, lead author of the study from the Department of Medicine, said these insights may help scientists design more effective antibiotics;

“How DNA melts is a fundamental part to all life – bacterial and human. Now that we know how RNA polymerase changes it shape to melt the DNA, this opens avenues for interfering with this pathway – and stopping bacterial growth.”

And because this protein production system is the same in humans, these findings may also provide clues into disease.

“Protein production can become dysregulated in diseases such as cancer, and these findings could give us greater understanding of how this can happen. The results may also have implications for gene-editing techniques such as CRISPR, which allows scientists to insert or remove genes—as these require targeted gene melting,”

explained co-author Professor Martin Buck, from the Department of Life Sciences.

Glyde, Robert et al.
Structures of Bacterial RNA Polymerase Complexes Reveal the Mechanism of DNA Loading and Transcription Initiation
Molecular Cell, Volume 70, Issue 6, 1111 – 1120.e3

Image: Imperial College London