Amyloid Beta Molecular Binding Site Identified

A specific binding site on a mis-folded amyloid beta peptide, the kind suspected of causing Alzheimer’s disease, has been identified using a probe invented at Rice University. The finding could facilitate better drugs to treat the disease.

Furthermore, the researchers have discovered that when the metallic probe is illuminated, it catalyzes oxidation of the protein in a way they believe might keep it from aggregating in the brains of patients.

The study, conducted on long amyloid fibrils, backs up computer simulations by colleagues at the University of Miami that predicted the photoluminescent metal complex would attach itself to the amyloid peptide near a hydrophobic (water-avoiding) cleft that appears on the surface of the fibril aggregate. That cleft presents a new target for drugs.

A Walk On The Beach

Finding the site was relatively simple once the lab of Rice chemist Angel Martí used its rhenium-based complexes to target fibrils. The light-switching complex glows when hit with ultraviolet light, but when it binds to the fibril it becomes more than 100 times brighter and causes oxidation of the amyloid peptide.

“It’s like walking on the beach,” Marti said. “You can see that someone was there before you by looking at footprints in the sand. While we cannot see the rhenium complex, we can find the oxidation (footprint) it produces on the amyloid peptide.

That oxidation only happens right next to the place where it binds. The real importance of this research is that allows us to see with a high degree of certainty where molecules can interact with amyloid beta fibrils. We believe this hydrophobic cleft is a general binding site (on amyloid beta) for molecules.

This is important because amyloid beta aggregation has been associated with the onset of Alzheimer’s disease. We know that fibrillar insoluble amyloid beta is toxic to cell cultures. Soluble amyloid oligomers that are made of several mis-folded units of amyloid beta are also toxic to cells, probably even more than fibrillar.”

When amyloid peptides fold properly, they hide their hydrophobic residues while exposing their hydrophilic (water-attracting) residues to water. That makes the proteins soluble, Martí said.

But when amyloid beta misfolds, it leaves two hydrophobic residues, known as Valine 18 and Phenylalanine 20, exposed to create the hydrophobic cleft.

“It’s perfect, because then molecules with hydrophobic domains are driven to bind there. They are compatible with this hydrophobic cleft and associate with the fibril, forming a strong interaction,”

Martí said.

Photochemical Modifications

A metallic probe that binds to amyloid beta

A metallic probe that binds to amyloid beta peptides offers a way to identify binding sites on the misfolded protein implicated in Alzheimer’s disease.
Credit: Brandon Martin/Rice University

If the resulting oxidation keeps the fibrils from aggregating farther into the sticky substance found in the brains of Alzheimer’s patients, it may be the start of a useful strategy to stop aggregation before symptoms of the disease appear.

“It’s a very attractive system because it uses light, which is a cheap resource,” Martí said. “If we can modify complexes so they absorb red light, which is transparent to tissue, we might be able to perform these photochemical modifications in living animals, and maybe someday in humans.”

He said light activation allows the researchers to have “exquisite control” of oxidation.

“We imagine it might be possible someday to prevent symptoms of Alzheimer’s by targeting amyloid beta in the same way we treat cholesterol in people now to prevent cardiovascular disease,”

Martí added.

Amir Aliyan, Thomas J. Paul, Bo Jiang, Christopher Pennington, Gaurav Sharma, Rajeev Prabhakar, Angel A. Marti
Photochemical Identification of Molecular Binding Sites on the Surface of Amyloid-β Fibrillar Aggregates
Chem, 2017; DOI: 10.1016/j.chempr.2017.09.011

Image: Martí Group/Rice University